PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_1986BD81F.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 713aa    MW: 81381.4 Da    PI: 5.9827
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_1986BD81F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.35.9e-2485174289
                   FAR1   2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            fYneYA+++GF  r+ +s++sk  ++ +++r+fvCs+eg  ++++ +  + +++r+r++ r gC+a+++v +e +++w+v+kl++ Hn
  Traes_5AS_1986BD81F.2  85 FYNEYARHLGFPFRVGRSRRSKGaEEVVVMRRFVCSREGMYRKKNPSsdEATKKRERMSMREGCNAMMEVVRE-SNHWVVSKLDTAHN 171
                            *********************651566789*********8777665545788999****************99.9************* PP

                   FAR1  87 Hel 89 
                            H+l
  Traes_5AS_1986BD81F.2 172 HNL 174
                            *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2185174IPR004330FAR1 DNA binding domain
PfamPF105515.4E-29267358IPR018289MULE transposase domain
PROSITE profilePS5096611.14546582IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-9548579IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEAARSEGDE LIADYVDCLM SLDTNAQSVQ NNNLILGDPV IEAGVAASVG GITEQNAMKD  60
FVPPEDPKEP LLGMTFESDE AAKTFYNEYA RHLGFPFRVG RSRRSKGAEE VVVMRRFVCS  120
REGMYRKKNP SSDEATKKRE RMSMREGCNA MMEVVRESNH WVVSKLDTAH NHNLGTCSRV  180
GYLRDRGLLD ASNKITMMGS DGVPFLRQNI LGEGGDAQGL LDYLKKMQGN DPAFFHAIQV  240
DKNSCLMNVF WADARAKLAY QHFGDAVTFD TTYKKNKYMM PFVTFSGVNH HLQRVIFGCA  300
LLMEDTECSF VWLFETWLAA MSGKAPCSLV TDQNRAMKAA IGRVFPHTCH RFCKWHILSR  360
TKQKLAHTYS EHPTLIDELE SCVIESETIN TFETAWMSII DTYDLRNNTW LQAMYNIRQK  420
WVPLYLMDTF CAEISKAQKL ETMNDFYKKY FSTKVTLEVF LTQFDLSTEN HYEEEAKADM  480
DTSLNLVTTK TASPMEKQAA RTYTKAVFSR FQEEFTESLA YIIQKTKDGC ISEYNVMKDE  540
NSSDTFCVTY NASNKMAKCS CKYFEFSGIL CRHILGVFII VDPHLLPPDY YLKRWTRKAR  600
DCGLLEYNCD NHQDDACQSI TSRYDVLCAD AIRYAEKGSG SETVYKAAKD ILQKAYEEII  660
VYERNPTRVS QRDAININED VMVDDSMTDQ SLPDSRQKVT NLLGQFLVSS WSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238603.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5F3U20.0W5F3U2_WHEAT; Uncharacterized protein
STRINGMLOC_38921.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-151FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]